M.Sc. in Bioinformatics from Tarbiat Modares University; Highly experienced and skilled in
structural bioinformatics and building bioinformatics software.
Interested in systems biology and helping cancer treatment using computational methods.
Diligent graduate of Tarbiat Modares University, recognized for outstanding performance, with a track record of demonstrating strong problem-solving and communication skills.
My various projects provide evidence of my computational and perceptual skills, interest in teamwork, hard work, and problem-solving abilities.
Thesis title: EasyModel: a user-friendly web-based interface based on MODELLER
Selected courses: Bioinformatics basics, Cellular and Molecular Biology, Advanced algorithm, Machine Learning, Modeling and predicting the structure of macromolecules, Systems Biology, Analysis of gene expression data, Drug design, Computational genomics, new topics in bioinformatics.
Thesis title: Java mobile application for home appliance store with pre-purchase capability
Selected courses: Engineering statistics and probabilities, Mathematical engineering, Discrete mathematics, Machine and assembly language, Design algorithms, System programming, Artificial intelligence.
Published: 20 September 2024
Author(s):
Sara Zareei,
Babak Khorsand,
Alireza Dantism, et al.
Published: 11 October 2023
Author(s):
S. Arab, A. Dantism
Bioinformatics Tools: MODELLER, ClusPro, Haddock, AutoDock, Chimera, Cytoscape, Hyperchem
Programming: R, Python, PHP (Laravel), Vue3.js, Shell Script, Java, Drupal, Html, CSS, JavaScript
GIT (VERSION CONTROL TOOLS): GitHub
Operating Systems: Mac, Linux, Windows
Others: LaTeX, Photoshop
In this study, with having databases of all kinds of genomes, we want to check the available primers and see if there is a complementary relationship with the genomes in the database.
As a project, our primer must be specific and if it sticks to another existing gene, cross reactivity will occur and we will check this cross reactivity in silico.
Programming Skills: Python
Dataset: Human bulk cell RNA-Seq data.
Programming Skills: R
Libraries: Tidyverse, Magrittr, WGCNA, DESeq2, Genefilter
Programming Skills: Python
Tarbiat Modares University, Tehran, Iran
PDB Code: 4DLP
Tools: GROMACS, AutoDock Vina
Course project at Tarbiat Modares Unviersity
Programming Skills: Matlab
Course project at Tarbiat Modares University
Tarbiat Modares University, Iran
Tarbiat Modares University, Iran
Full scholarship (tuition waiver) from Tarbiat Modares University, 2020.
Full scholarship (tuition waiver) from Technical and Vocational University, 2017.
Systems biology, Cancer treatments, Structures and dynamics of macromolecular assemblies, Machine learning, R/Python package development, Predicting the three-dimensional structure of macromolecules, Immune system, Gene expression, Algorithm solutions, Programming, Building online bioinformatics tools.